Background & Aims
Food additives, such as emulsifiers, stabilizers, or bulking agents, are present in the Western diet and their consumption is increasing. However, little is known about their potential effects on intestinal homeostasis. In this study we examined the effect of some of these food additives on gut inflammation.
Methods
Mice were given drinking water containing maltodextrin (MDX), propylene glycol, or animal gelatin, and then challenged with dextran sulfate sodium or indomethacin. In parallel, mice fed a MDX-enriched diet were given the endoplasmic reticulum (ER) stress inhibitor tauroursodeoxycholic acid (TUDCA). Transcriptomic analysis, real-time polymerase chain reaction, mucin-2 expression, phosphorylated p38 mitogen-activated protein (MAP) kinase quantification, and H&E staining was performed on colonic tissues. Mucosa-associated microbiota composition was characterized by 16S ribosomal RNA sequencing. For the in vitro experiments, murine intestinal crypts and the human mucus-secreting HT29-methotrexate treated cell line were stimulated with MDX in the presence or absence of TUDCA or a p38 MAP kinase inhibitor.
Results
Diets enriched in MDX, but not propylene glycol or animal gelatin, exacerbated intestinal inflammation in both models. Analysis of the mechanisms underlying the detrimental effect of MDX showed up-regulation of inositol requiring protein 1β, a sensor of ER stress, in goblet cells, and a reduction of mucin-2 expression with no significant change in mucosa-associated microbiota. Stimulation of murine intestinal crypts and HT29-methotrexate treated cell line cells with MDX induced inositol requiring protein 1β via a p38 MAP kinase–dependent mechanism. Treatment of mice with TUDCA prevented mucin-2 depletion and attenuated colitis in MDX-fed mice.
Conclusions
MDX increases ER stress in gut epithelial cells with the downstream effect of reducing mucus production and enhancing colitis susceptibility.
Inflammatory bowel disease (IBD) is a term used to describe 2 chronic inflammatory disorders of the gut, namely ulcerative colitis and Crohn's disease.
1Inflammatory bowel disease.
Although the etiology of IBD remains unknown, accumulating evidence has suggested that the pathologic process results from an interaction between environmental and genetic factors, which trigger an excessive intestinal immune response against components of the gut microflora.
2The immunological and genetic basis of inflammatory bowel disease.
, In the past decades, there has been an increase in the incidence of IBD in previously low-incidence regions of the world (eg, Asia), coincident with these countries becoming more westernized.
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Epidemiologic studies have indicated that Western dietary factors, particularly those that result in being overweight or obese, can influence the development of IBD.
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However, it remains unclear which dietary factors have a causative role in IBD and how each of these factors may affect intestinal homeostasis.
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A Western diet can shape the intestinal microbiota and promote overgrowth of microorganisms potentially involved in the development of IBD.
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Another possibility is that Western diet–related elements, such as high dietary salt and saturated fatty acids, can directly target mucosal immune cells and potentate pathogenic responses.
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In addition, diet can have a direct impact on the mucus layer of the gastrointestinal tract.
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A Western diet also is rich in food additives, which commonly are added as stabilizers, coating materials, or bulking agents in prepackaged foods. Although the US Food and Drug Administration recognizes these dietary elements as safe, their use has been linked to the development of intestinal pathologies in both animals and human beings.
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The dietary polysaccharide maltodextrin promotes Salmonella survival and mucosal colonization in mice.
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Crohn's disease-associated adherent-invasive Escherichia coli adhesion is enhanced by exposure to the ubiquitous dietary polysaccharide maltodextrin.
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Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome.
It also has been shown that the polysaccharide maltodextrin (MDX), which is commonly used as a filler and thickener during food processing, can alter microbial phenotype and host antibacterial defenses. MDX expands the
Escherichia coli population in the ileum and induces necrotizing enterocolitis in preterm piglets.
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Nickerson and McDonald
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Crohn's disease-associated adherent-invasive Escherichia coli adhesion is enhanced by exposure to the ubiquitous dietary polysaccharide maltodextrin.
reported that MDX increases cellular adhesion of the “adherent and invasive
E coli” strain and in vivo studies have shown an increased load of cecal bacteria in MDX-fed mice upon oral infection with
Salmonella, even though MDX by itself did not induce disease.
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The dietary polysaccharide maltodextrin promotes Salmonella survival and mucosal colonization in mice.
In this study, we therefore investigated whether food additives used in the Western diet can perturb intestinal homeostasis and exacerbate gut inflammation.
Discussion
This study was performed to ascertain whether food additives commonly used in the Western diet could promote/exacerbate gut inflammation. Initial experiments showed that daily consumption of each of 3 common food additives, namely MDX, PG, and GEL for 45 days, did not induce overt colitis. However, mice given MDX, but not PG or GEL, showed increased severity of intestinal inflammation after DSS or indomethacin administration. The concentration of MDX selected for this study (ie, 5%) is equivalent to levels commonly found in infant formulas,
24- Thymann T.
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Carbohydrate maldigestion induces necrotizing enterocolitis in preterm pigs.
even though it is highly likely that the amount of MDX reaching the distal intestine is lower than what was administered to mice. We next performed a microarray analysis of colon samples from MDX-treated mice to determine the mechanisms involved. Among the most up-regulated genes in the MDX-treated mice was
Ern-2, which encodes for IRE1β, a sensor of ER stress that mitigates the uncontrolled activation of ER stress response in epithelial cells. Indeed, IRE1β is expressed in intestinal epithelial and airway mucus cells, where it promotes efficient protein folding and secretion of mucins by regulating the level of Muc-2 RNA.
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Negative feedback by IRE1beta optimizes mucin production in goblet cells.
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The ER stress transducer IRE1beta is required for airway epithelial mucin production.
Therefore, it is plausible that IRE1β up-regulation in the colons of MDX-fed mice reflects the activation of a counter-regulatory mechanism that attempts to limit ER stress response in goblet cells. Next, we evaluated whether MDX altered the production of mucus. Mice receiving MDX had marked reduction of O-linked, glycosylated, mature Muc-2, even though they showed increased Muc-2 RNA expression. Altogether, these results indicate that mucus depletion seen in MDX-fed mice reflects alterations in Muc-2 maturation/folding and secretion rather than being a consequence of a defect in goblet cell development. In line with the earlier-described findings, in vitro stimulation of murine intestinal crypts and mucus-secreting HT29-MTX cells with MDX increased IRE1β expression.
Our data suggest a model in which MDX-enriched diet triggers the ER stress sensor IRE1β in intestinal epithelial cells via p38 MAPK, because MDX increased the expression of p-p38 in mice and HT29-MTX cells. Moreover, pharmacologic inhibition of p38 with SB202190, which is known to interfere with p38 MAP kinase activity
35Role of CSB/p38/RK stress response kinase in LPS and cytokine signaling mechanisms.
and to partially impair p38 phosphorylation through an indirect or feedback response mechanism,
36- Geiger P.C.
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Activation of p38 MAP kinase enhances sensitivity of muscle glucose transport to insulin.
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as well as p38 knock-down using a specific siRNA abrogated MDX-driven IRE1β expression. The effect of MDX on Muc-2 content appears to be specific because MDX did not affect expression of other epithelial proteins (ie, defensins, zonulins, and claudins).
We surmise that induction of ER stress in goblet cells is functionally relevant to the detrimental effects of MDX because pretreatment of mice with TUDCA, a chemical chaperone that inhibits ER stress, prevented MDX-mediated
Ern-2 RNA overexpression and Muc-2 protein down-regulation, as well as the detrimental effect of MDX on DSS-induced colitis. Because TUDCA was reported to exert other protective functions in the gut (eg, reduction of proinflammatory cytokine synthesis and improvement of intestinal barrier function),
39- Kim S.J.
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Anti-inflammatory effect of tauroursodeoxycholic acid in RAW 264.7 macrophages, bone marrow-derived macrophages, BV2 microglial cells, and spinal cord injury.
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Tauroursodeoxycholic acid inhibits intestinal inflammation and barrier disruption in mice with non-alcoholic fatty liver disease.
we cannot exclude the possibility that TUDCA-mediated prevention of intestinal damage in colitic mice receiving MDX can in part rely on other potential regulatory effects of the compound.
Our data support previous studies showing that goblet cells are one of the major cells that tend to undergo ER stress in the intestinal epithelium.
28- Heazlewood C.K.
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Aberrant mucin assembly in mice causes endoplasmic reticulum stress and spontaneous inflammation resembling ulcerative colitis.
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An intestinal epithelial defect conferring ER stress results in inflammation involving both innate and adaptive immunity.
This diminishes the integrity of the mucus barrier by reducing biosynthesis and mucin secretion.
28- Heazlewood C.K.
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Aberrant mucin assembly in mice causes endoplasmic reticulum stress and spontaneous inflammation resembling ulcerative colitis.
The ability of MDX to promote ER stress appears unique because other food additives, such as titanium dioxide, have been reported to damage intestinal epithelial cells through a mechanism mediated by oxidative stress and independent of ER stress.
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Titanium dioxide nanoparticles exacerbate DSS-induced colitis: role of the NLRP3 inflammasome.
After synthesis by goblet cells, Muc-2 is secreted into the lumen and forms a protective mucus gel layer that acts as a selective barrier to protect the epithelium from mechanical stress, noxious agents, bacteria, and other pathogens.
43- Johansson M.E.
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The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions.
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The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria.
, 45- Johansson M.E.
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- Hansson G.C.
The gastrointestinal mucus system in health and disease.
Indeed, in the absence of a mucus layer, as in Muc-2–deficient mice, colonization of enteric pathogens occurs to a greater extent and more readily than in wild-type animals.
46- Johansson M.E.
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- Xia L.
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- Carvalho F.A.
- Gewirtz A.T.
- Sjovall H.
- Hansson G.C.
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis.
Moreover, after infection with specific pathogens (eg,
Citrobacter rodentium,
Entamoeba histolytica), Muc-2–deficient mice show greater damage to the epithelium and have more colonic ulceration.
47- Bergstrom K.S.
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Muc2 protects against lethal infectious colitis by disassociating pathogenic and commensal bacteria from the colonic mucosa.
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Entamoeba histolytica exacerbates epithelial tight junction permeability and proinflammatory responses in Muc2(-/-) mice.
Mucosa-associated microbiota composition remained unchanged on a MDX-enriched diet, arguing against the hypothesis that mucosal dysbiosis plays a key role in the negative effect of MDX on mucus formation. Our results differ from recently published data showing that dietary emulsifiers promote modest disturbances of the luminal microbiota, thus resulting in low-grade inflammation in wild-type mice, inducing severe alterations of gut microbiota composition, promoting robust colitis in mice lacking the immune-regulatory cytokine IL10, and negatively impacting the luminal microbiota composition in human beings.
19- Chassaing B.
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Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome.
, 49- Chassaing B.
- Van de Wiele T.
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- Marzorati M.
- Gewirtz A.T.
Dietary emulsifiers directly alter human microbiota composition and gene expression ex vivo potentiating intestinal inflammation.
Overall, the earlier-described observations indicate that multiple dietary components can alter intestinal homeostasis, contributing to the initiation and progression of pathologic conditions. In this context, it has been proposed that changes in the mucus barrier or biosynthesis of mucins play a role in the onset and persistence of IBD. In particular, in the inflamed colons of patients with ulcerative colitis, the mucus layer is thin owing to decreased Muc-2 production and secretion resulting from goblet cell depletion.
46- Johansson M.E.
- Gustafsson J.K.
- Holmen-Larsson J.
- Jabbar K.S.
- Xia L.
- Xu H.
- Ghishan F.K.
- Carvalho F.A.
- Gewirtz A.T.
- Sjovall H.
- Hansson G.C.
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis.
Indeed, these cells contain fewer mucin granules, which are filled with a nonglycosylated Muc-2 precursor, a finding that resembles that seen in mice exposed to MDX. Similarly, there is evidence that alterations in the amount and composition of the mucus barrier lead to IBD-like pathology in mice and that decreased Muc-2 output resulting from ER stress can diminish the mucus barrier and ultimately trigger inflammation.
28- Heazlewood C.K.
- Cook M.C.
- Eri R.
- Price G.R.
- Tauro S.B.
- Taupin D.
- Thornton D.J.
- Png C.W.
- Crockford T.L.
- Cornall R.J.
- Adams R.
- Kato M.
- Nelms K.A.
- Hong N.A.
- Florin T.H.
- Goodnow C.C.
- McGuckin M.A.
Aberrant mucin assembly in mice causes endoplasmic reticulum stress and spontaneous inflammation resembling ulcerative colitis.
This hypothesis is supported further by our demonstration that persistent mucus depletion in mice receiving a long-term MDX diet leads to low-grade inflammation.
In conclusion, this study shows that a MDX-enriched diet reduces the intestinal content of Muc-2, thus making the host more sensitive to colitogenic stimuli. These data together with the demonstration that MDX can promote epithelial intestinal adhesion of pathogenic bacteria
21- Nickerson K.P.
- McDonald C.
Crohn's disease-associated adherent-invasive Escherichia coli adhesion is enhanced by exposure to the ubiquitous dietary polysaccharide maltodextrin.
supports the hypothesis that Western diets rich in MDX can contribute to gut disease susceptibility.
Materials and Methods
Mice
Balb/c mice (age, 6–7 wk) were purchased from Charles River Laboratories Italia Srl (Rozzano (MI), Italy) and hosted in the animal facility at the University of Rome Tor Vergata (Rome, Italy). All in vivo experiments were approved by the animal ethics committee according to Italian legislation on animal experimentation.
Food Additive Treatment and Experimental Gut Inflammation
MDX (dextrose equivalent, 4.0–7.0; #419672) and propylene glycol (>99.5% Food Chemicals Codex; #W294004) were purchased from Sigma (Milan, Italy). Animal gelatin from bovine and porcine bones was purchased from Honeywell Fluka (Milan, Italy) (#53028). Mice were exposed to MDX (concentration range, 1%–5%), PG (0.5%), and GEL (5 g/L) in drinking water for 45 days. Water was changed every second day. During the last 10 days, animals received DSS (1.75%, #160110; MP Biomedicals, Santa Ana, CA) either in normal drinking water, or MDX-, PG-, or GEL-enriched drinking water. Mice were weighed daily. Mice were killed after 10 days of treatment with DSS and colon samples were collected for histology, protein and RNA extraction, and isolation of IECs and LPMCs. In parallel, mice receiving a MDX-enriched diet, together with control mice, were given 250 mg/kg TUDCA (Carbosynth Ltd, Berkshire, UK) intraperitoneally every other day starting from day 21 of diet.
In additional experiments, mice were exposed to drinking water in the presence or absence of MDX 5% for 35 days and then injected subcutaneously with indomethacin (5 mg/kg, #I7378; Sigma). Mice were killed 24 hours later and ileal samples were collected for histologic analysis.
Cell Isolation and Cultures
IECs and LPMCs were isolated from murine colons as described previously.
50- Monteleone I.
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- Sarra M.
- Franze E.
- Casagrande V.
- Zorzi F.
- Cavalera M.
- Rizzo A.
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- Pallone F.
- MacDonald T.T.
- Monteleone G.
Tissue inhibitor of metalloproteinase-3 regulates inflammation in human and mouse intestine.
Cells were resuspended in lysis buffer supplemented with 1% β-mercaptoethanol and stored at -80°C until RNA extraction. To isolate murine crypts, fresh colon specimens were cut in 5-mm size fragments and incubated in Dulbecco’s modified Eagle medium containing 15 mmol/L EDTA for 1 hour at 4°C. The resulting crypts were stimulated with MDX 5% for 30 minutes and then resuspended in lysis buffer supplemented with 1% β-mercaptoethanol and stored at -80°C until RNA extraction.
The mucous-secreting HT29-MTX cell line was obtained from the European Collection of Authenticated Cell Cultures (Public Health England, Porton Down, Salisbury, UK). Cells were cultured in Dulbecco’s modified Eagle medium supplemented with 10% fetal bovine serum, penicillin (0.1%), and streptomycin (0.1%). Subconfluent cells were cultured in the presence of increasing concentrations of MDX (from 1% to 5%) for 1 hour or with MDX 5% for different time points (5 minutes, 15 minutes, 30 minutes, and 1 h). In some experiments, HT29-MTX cells were pretreated with TUDCA (10 μmol/L) or a p38-MAPK inhibitor (S202190; Calbiochem, San Diego, CA) for 1 hour or transfected with p38 or a control siRNA (Santa Cruz Biotechnology, Dallas, TX) using Lipofectamine 3000 reagent (Invitrogen, Carlsbad, CA). After stimulation with MDX, cells were collected and pellets were immediately stored at -80°C for protein extraction, or resuspended in lysis buffer supplemented with 1% β-mercaptoethanol and stored at -80°C until RNA extraction.
Transcriptome Analysis
Total RNA was extracted from colon samples using the PureLink Purification technology kit with the RNase-free DNase set (Thermo Fisher Scientific, Monza, Italy). Samples with quantified complementary DNA were sequenced in the Microarray Unit of the Consortium for Genomic Technologies (Milan, Italy) by hybridization to GeneChip (Cogentech, Milan, Italy) Mouse Gene 2.0 ST microarrays. Signal intensities of fluorescent images produced during GeneChip hybridizations were read by an Affymetrix (Santa Clara, CA) Model 3000 Scanner. Transcripts were selected on base of fold change value of 2 or higher. All the transcripts present on the GeneChip array were mapped to related classes by Gene Onthology, which provided the fold change generated from the comparison between MDX vs water. All the lists were annotated using the latest version of GeneChip Mouse Gene ST 2.0 annotations provided by NetAffx (Affymetrix) portal. The microarray data set has been deposited in the Gene Expression Omnibus databank (accession no. GSE117639;
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117639).
Real-Time PCR
Total RNA was isolated from colon biopsy specimens and cells using PureLink Purification technology (Thermo Fisher Scientific). A constant amount of RNA (1 μg/sample) was retrotranscribed into complementary DNA. Reverse-transcription was performed with Oligo(dT) primers and with M-MLV reverse-transcriptase (Thermo Fisher Scientific). Real-time PCR was performed for murine IL1β, Lcn-2, tumor necrosis factor-α, interferon-γ, IL17A, endoplasmic reticulum to nucleus signaling 1 (Ern-1), Ern-2, β-defensin-1, zonulin-1, claudin-7, spliced X-box binding protein 1, activating transcription factor 6, activating transcription factor 4, and Chop using the IQ SYBR Green Supermix (Bio-Rad Laboratories, Milan, Italy), and for murine zonulin-2, claudin-2, and human Ern-2 using TaqMan Gene Expression Assays (Thermo Fisher Scientific). RNA expression was calculated relative to the β-actin gene using the Delta-Delta Cycle threshold algorithm.
Quantification of Fecal Lipocalin-2 by Enzyme-Linked Immunosorbent Assay
Fecal samples were weighted and resuspended in phosphate-buffered saline (PBS) containing 0.1% Tween 20 at a final concentration of 100 mg/mL. Samples then were vortexed for 20 minutes and centrifugated for 10 minutes at 14,000g and 4°C. Supernatants then were collected and stored at -80°C until analysis. Lcn-2 protein levels were quantified using the Duoset murine Lcn-2 enzyme-linked immunosorbent assay kit (R&D Systems, Minneapolis, MN), and optical density was read at 450 nm.
Western Blot
Cells were lysed on ice in buffer containing 10 mmol/L HEPES (pH 7.9), 10 mmol/L potassium chloride, 0.1 mmol/L EDTA, 0.2 mmol/L ethylene glycol-bis (β-aminoethyl ether)-N,N,N′,N′-tetraacetic acid, and 0.5% Nonidet P40 supplemented with 1 mmol/L dithiothreitol, 10 mg/mL aprotinin, 10 mg/mL leupeptin, 1 mmol/L phenylmethylsulfonyl fluoride, 1 mmol/L Na3VO4, and 1 mmol/L sodium fluoride. Lysates were clarified by centrifugation and separated on sodium dodecyl sulfate–polyacrylamide gel electrophoresis. Blots were incubated with antibodies against p-p38 (1:1000, #4511S; Cell Signalling Technology, Danvers, MA), p38 (#sc-7972), phosphorylated extracellular signal–regulated kinase-1/2 (#sc-7383), phosphorylated c-Jun N-terminal kinase (#sc-6254) (1:500; all from Santa Cruz Biotechnology), and β-actin antibody (1:5000, #A544; Sigma), followed by a secondary antibody conjugated to horseradish peroxidase (1:20,000; Dako, Santa Clara, CA).
Histopathologic Scoring and Immunohistochemistry
Cryosections of colon and ileum samples were stained with H&E and scored in blinded fashion on the basis of changes of the epithelium and cell infiltration, as previously described.
51- Dohi T.
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- Kato R.
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Therapeutic potential of follistatin for colonic inflammation in mice.
Cryosections of colon specimens were stained with rabbit anti-cleaved caspase-3 antibody (1:150, #9661S; Cell Signalling Technology) and positive cells were visualized using MACH4 Universal Horseradish-Peroxidase Polymer kit with 3,3′-diaminobenzidine tetra hydrochloride (#M4BD534G; Biocare Medical, Pacheco, CA).
Immunofluorescence and Periodic Acid-Schiff–Alcian Blue Staining
Cryosections of colon were placed in methanol–Carnoy’s fixative solution (60% methanol, 30% chloroform, 10% glacial acetic acid) for 2 hours at room temperature for Muc-2 detection or in paraformaldehyde 4% for 10 minutes at room temperature for p-p38 staining. Sections then were washed in PBS 1 time and permeabilized with 0.1% Triton (Segrate (MI), Italy) X-100 for 20 minutes. Blocking procedure (bovine serum albumin 1%, Tween 0.1%, glycine 2%) was performed for 1 hour at room temperature and rabbit primary antibody against Muc-2 (1:100, #sc-15334; Santa Cruz Biotechnology), rabbit primary antibody against p-p38 (1:100, #4511S; Cell Signalling Technology), and O-linked sugar residues (1:500, lectin from Dolichos biflorus [horse gram], #L6533; Sigma) were incubated overnight at 4°C. After washing with PBS 1 time, the secondary antibody goat anti-rabbit Alexa 488 (1:2000, #A11008; Invitrogen) and streptavidin Alexa 568 (1:2500, #S11226; Thermo Fisher Scientific) were applied for 2 hours at room temperature. Slides were washed with PBS 1 time and mounted using Prolong gold antifade reagent with 4′,6-diamidino-2-phenylindole (#P36931; Invitrogen) and analyzed by a Leica DMI4000 B microscope with Leica (Wetzlar, Germany) application suite software (V4.6.2). To visualize goblet cells, cryosections of colon samples were placed in methanol–Carnoy’s fixative solution for 2 hours at room temperature and stained with the periodic acid-Schiff/Alcian blue stain kit (#04-163802; Bio-Optica, Milan, Italy).
Microbiota Analysis by 16S Ribosomal RNA Gene Sequencing
16S Ribosomal RNA gene sequence analysis was performed by Polo d’Innovazione di Genomica, Genetica e Biologia (Siena, Italy) using genomic DNA extracted from colon biopsy specimens. The libraries were prepared in accordance with the Illumina (San Diego, CA) 16S Metagenomic Sequencing Library Preparation Guide (part # 15044223 Rev. B) and the Nextera XT Index Kit (Illumina). PCR was performed to amplify template from the DNA samples using region of interest–specific primers (16S V4 region) with overhang adapters attached. A first purification step used AMPure XP (Beckman Coulter, Brea, CA) beads to purify the 16S amplicon from free primers and primer-dimers. A second PCR step attached dual indices and Illumina sequencing adapters using the Nextera XT Index Kit. Libraries were validated using the Agilent (Santa Clara, CA) 2100 Bioanalyzer to check size distribution. Indexed DNA libraries were normalized to 4 nmol/L and then pooled in equal volumes. The pool was loaded at a concentration of 9 pmol/L onto an Illumina Flowcell v2 with 20% of Phix control. The samples then were sequenced using the Illumina MiSeq, 2 × 250 bp paired end run. Quality control was performed using the FastQC tool (Illumina) and the Trimmomatic (USADELLAB, Aachen, Germany) software package was used. Sequenced paired-end reads were merged to reconstruct the original full-length 16S amplicons with PEAR software (by Prof. Alexandros Stamatakis, Heidelberg, Germany). All amplicons with sequence similarity higher than 97% were grouped together and a representative was chosen as input for the taxonomy annotation and building the operational taxonomic unit (OTU) table. Sequences were searched for matching in the SILVA taxonomy database (v128) using the open-reference OTU picking algorithm. The resulting OTU table was encoded in Biological observation Matrix format (
http://biom-format.org/). The α-diversity (within sample) was investigated by means of 3 different indexes: Shannon, Simpson, and Fisher α index. Sample richness was investigated through Chao and phylogenetic diversity estimators. β-diversity was quantified using both OTU- and phylogenetic-based methods. The data set has been deposited in the Sequence Read Archive (accession no. SRP155816,
https://www.ncbi.nlm.nih.gov/sra/SRP155816).
Overnight Fasting Blood Glucose Measurement
Mice were exposed to drinking water supplemented with 5% MDX for 10 weeks. After a 15-hour fast, baseline blood glucose levels were measured using the One touch Verio Flex Glucose Meter (Burnaby, BC, Canada) and expressed as mg/dL.
Statistical Analysis
Parametric data were analyzed using the 2-tailed Student t test for comparison between 2 groups or 1-way analysis of variance followed by the Bonferroni post hoc test for multiple comparisons. Nonparametric data were analyzed using the Mann–Whitney U test for comparison between 2 groups or the Kruskal–Wallis test for multiple comparisons. Significance was defined as a P value less than .05.
Article info
Publication history
Published online: September 11, 2018
Accepted:
September 4,
2018
Received:
March 6,
2018
Footnotes
Author contributions F. Laudisi was responsible for the study concept and design, technical and material support, acquisition of data, analysis and interpretation of data, drafting the manuscript, and statistical analysis; D. Di Fusco was responsible for the analysis and interpretation of data, acquisition of data, and technical and material support; V. Dinallo, A. Di Grazia, I. Marafini, A. Colantoni, A. Ortenzi, M. Mavilio, and F. Guerrieri were responsible for technical and material support; C. Stolfi was responsible for the analysis and interpretation of data, and technical and material support; C. Alteri was responsible for the interpretation of data and technical and material support; F. Ceccherini-Silberstein was responsible for the analysis and interpretation of data and critical revision of the manuscript; M. Federici and T. T. MacDonald were responsible for critical revision of the manuscript; I. Monteleone was responsible for the analysis and interpretation of data and critical revision of the manuscript; and Giovanni Monteleone was responsible for the study concept and design, analysis and interpretation of data, and drafting and critical revision of the manuscript. All authors had access to all data and reviewed and approved the final manuscript.
Conflicts of interest The authors disclose no conflicts.
Funding This work was supported in part by the Ministry of Education, Universities and Research (Bandiera InterOmics Protocollo PB05 1°).
Copyright
© 2019 The Authors. Published by Elsevier Inc. on behalf of the AGA Institute.