Background and Aims
Methods
Results
Conclusions
Graphical abstract

Keywords
Abbreviations used in this paper:
BMI (body mass index), HPF (high-powered field), IBD (inflammatory bowel disease), PBS (phosphate-buffered saline), TLR (Toll-like receptor)Methods
Human Subjects
Patient # | Age | Sex | Race | Weight (kg) | Height (cm) | BMI (kg/m2) | Blood glucose concentration (mg/dL) | HbA1C (%) | DM | Cholesterol (mg/dL) | Triglyceride (mg/dL) | LDL (mg/dL) | Average distance of closest bacteria to intestinal epithelial cells (μm) | PMH | Medication | Antibiotic | Bowel habits |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 68.5 | M | White | 96.6 | 180.3 | 30.00 | 104 | ND | No | 56 | 123 | 60 | 19.00 | Asthma, HLD, HTN | Diazepam, escitalopram, HCTZ/triamterene, losartan, prazosin, ASA | None | ND |
2 | 66.5 | M | White | 86.2 | 182.9 | 25.80 | 98 | 5.9 | No | 167 | 90 | 88 | 25.67 | RA, SICCA, HTN | Amlodipine, ASA, atorvastatin, folic acid, gabapentin, methotrexate, prednisone, ranitidine | Topical clindamycin and metronidazole | ND |
3 | 53.5 | M | Black | 68.0 | 182.9 | 20.39 | 75 | 5.7 | No | 205 | 62 | 80 | 30.50 | COPD | Albuterol, tiotropium, mometasone | None | ND |
4 | 65.5 | M | White | 87.4 | 175.3 | 28.50 | 97 | 6.0 | No | 199 | 167 | 122 | 18.60 | CAD, HLD, HTN, kidney stone, ischemic colitis | Lisinopril, metoprolol, pravastatin, | None | ND |
5 | 62.5 | M | Black | 105.2 | 175.3 | 34.33 | 148 | 7.7 | Yes | 167 | 129 | 92 | 10.80 | DM, hepatitis C, HTN, prostate cancer, cerebral thrombosis with infarction, OSA | Amlodipine, atorvastatin, gabapentin, glipizide, HCTZ, lisinopril, metformin, oxybutynin | None | Fecal incontinence |
6 | 63.5 | M | Black | 85.3 | 185.4 | 24.60 | 106 | 6.8 | Yes | 131 | 82 | 74 | 23.33 | DM, HTN, HLD | ASA, atenolol, diltiazem, losartan, metformin, pravastatin | None | GI ROS neg |
7 | 71.5 | M | White | 78.9 | 177.8 | 25.00 | 97 | 4.8 | No | 201 | 27 | 75 | 16.43 | CAD, HTN, Raynaud | Lisinopril, pravastatin | None | ND |
8 | 59.5 | M | Hispanic | 92.5 | 170.2 | 32.02 | 191 | 7.0 | Yes | 181 | 254 | 87 | 8.25 | DM, HTN, hepatitis C, asthma | Acarbose, albuterol, atorvastatin, gabapentin, glipizide, insulin, losartan, omeprazole, salsalate | Topical metronidazole | GI ROS neg |
9 | 50.5 | M | Black | 85.3 | 180.3 | 26.28 | 95 | 6.1 | No | 155 | 187 | 80 | 27.33 | Polysubstance abuse, BPH | Atorvastatin, tamsulosin | None | GI ROS neg |
10 | 61.5 | M | Black | 117.0 | 182.9 | 35.06 | 89 | 5.8 | No | 213 | 103 | 148 | 25.00 | HTN, DJD, HLD | Amlodipine, HCTZ, omeprazole, pravastatin | None | GI ROS neg |
11 | 47.5 | M | Black | 156.5 | 182.9 | 46.89 | 113 | 7.0 | Yes | 139 | 93 | 83 | 7.44 | OSA, DM, HTN, alcoholic fatty liver, HLD | Diclofenac, insulin, lisinopril, metformin | None | Constipation |
12 | 61.5 | M | White | 95.3 | 188.0 | 27.02 | 174 | 9.1 | Yes | 137 | 163 | 64 | 6.75 | DM, COPD, GERD, CAD, lung CA | Atenolol, gabapentin, hydralazine, HCTZ, insulin, lovastatin, metformin, omeprazole, tamsulosin | None | ND |
13 | 57.5 | M | White | 93.4 | 182.9 | 28.00 | 97 | 6.1 | No | 234 | 197 | 166 | 29.20 | Bronchitis | Prednisone | Moxifloxacin | GI ROS neg |
14 | 51.0 | M | Black | 93.9 | 170.2 | 32.49 | 95 | 6.0 | No | 180 | 65 | 118 | 28.00 | HTN, CVA | Docusate, HCTZ, potassium, terazosin, ASA, hydralazine, metoprolol, rosuvastatin | None | ND |
15 | 65.0 | M | Black | 119.3 | 172.7 | 40.07 | 80 | 6.0 | No | 213 | 307 | 106 | 19.25 | BPH, gout, HTN, HLD | Lisinopril, nifedipine | None | Hematochezia |
16 | 52.0 | M | Black | 137.4 | 188.0 | 38.98 | 189 | 10.0 | Yes | 169 | 346 | 69 | 4.75 | DM, OSA, HTN, GERD, gout, HLD | Allopurinol, ASA, atenolol, colchicine, gemfibrozil, HCTZ, Vicodin, insulin, synthroid, losartan, omeprazole, verapamil | Azithromycin | ND |
17 | 31.0 | M | Black | 68.5 | 180.3 | 21.10 | 114 | 5.3 | No | 195 | 164 | 121 | 21.67 | Heart transplant, CKD, anemia, GERD, hypothyroid, CHF | Diltiazem, magnesium, cellcept, pantoprazole, pravastatin, ranitidine, tacrolimus, valganciclovir | None | GI ROS neg |
18 | 51.0 | M | White | 78.5 | 177.8 | 24.87 | 106 | 5.9 | No | 202 | 121 | 141 | 26.50 | HLD, HTN, hypothyroid | HCTZ, lisinopril, synthroid, naproxen, omeprazole | None | ND |
19 | 56.0 | M | Black | 89.4 | 190.5 | 24.67 | 109 | 5.8 | No | 222 | 81 | 161 | 27.25 | Polysubstance abuse | Amoxicillin, Vicodin, Zofran | Amoxicillin | Diarrhea |
20 | 60.0 | M | Black | 123.4 | 180.3 | 38.20 | 70 | 8.2 | Yes | 150 | 66 | 92 | 18.50 | HTN, DM | Chlorthalidone, glipizide, lisinopril, metformin | None | GI ROS neg |
21 | 57.0 | M | White | 117.9 | 170.2 | 40.81 | 108 | 6.6 | Yes | 155 | 166 | 76 | 13.86 | Fatty liver, DM, HTN, HLD | Atenolol, chlorthalidone, atorvastatin, lisinopril, metformin | None | GI ROS neg |
22 | 54.0 | M | Hispanic | 104.3 | 182.9 | 31.26 | 314 | 7.4 | Yes | 196 | 155 | 128 | 5.17 | DM, HTN | B12, diclofenac, glipizide, insulin, losartan, metformin, pravastatin | None | ND |
23 | 60.0 | M | Black | 116.1 | 182.9 | 34.79 | 135 | 6.4 | Yes | 127 | 60 | 81 | 15.00 | DM, HTN | Hydrocodone, atorvastatin, lisinopril, metformin, aspirin | None | GI ROS neg |
24 | 72.0 | M | White | 102.1 | 182.9 | 30.58 | 102 | ND | No | 147 | 168 | 59 | 32.57 | HTN, hepatitis B | Lisinopril, metoprolol, hydrochlorothiazide, aspirin | None | GI ROS neg |
25 | 72.0 | M | Black | 93.0 | 182.9 | 27.96 | 107 | 6.2 | No | 161 | 115 | 97 | 33.00 | HTN | Omeprazole, hydrocholthiazide | None | GI ROS neg |
26 | 57.0 | M | White | 78.5 | 174.0 | 25.60 | 101 | 5.8 | No | 184 | 75 | 115 | 28.00 | HTN, seizures | Propranolol, pantoprazole, trazodone | None | GI ROS neg |
27 | 70.0 | M | Black | 104.8 | 188.0 | 29.72 | 119 | 5.1 | No | 155 | 65 | 86 | 31.60 | CKD, gout, hyperlipidemia, HTN, hypothyroidism | Ibuprofen, lubiprostone, amlodipine, allopurinol, atorvastatin, levothyroxine, losartan, colchicine | None | Constipation |
28 | 46.0 | M | White | 110.7 | 190.5 | 30.56 | 95 | 5.7 | No | 188 | 48 | 114 | 37.50 | GERD, HTN | Tramadol, ibuprofen, omeprazole, hydrochlorothiazide | None | ND |
29 | 55.0 | M | White | 118.9 | 190.5 | 33.47 | 108 | 7.5 | Yes | 415 | 351 | 277 | 13.00 | DM, HTN, CKD, hyperlipidemia, psoriasis | Amlodipine, glipizide, hydrochlorothiazide, pravastatin | None | GI ROS neg |
30 | 36.0 | M | Black | 79.4 | 188.0 | 21.92 | 88 | ND | No | ND | ND | ND | 28.75 | None | Codeine, ibuprofen, cholecalciferol | None | Diarrhea/some blood in stool |
31 | 63.0 | M | Black | 99.2 | 188.0 | 28.13 | 98 | ND | No | 172 | 49 | 95 | 36.00 | Deep vein thrombosis, hepatitis C | Multivitamin, thiamine | None | GI ROS neg |
32 | 74.0 | M | White | 105.2 | 182.9 | 32.43 | 232 | 9.3 | Yes | 186 | 239 | 104 | 4.33 | CAD, DM, CKD, HTN, GERD | Calcitriol, docusate, cyanocobalamin, aspirin, metoprolol, carbidopa, amlodipine, furosemide, insulin, divalproex | None | GI ROS neg |
33 | 70.0 | M | White | 90.7 | 177.8 | 28.76 | 106 | 6 | No | 215 | 179 | 140 | 25.20 | DJD, CAD, hyperlipidemia | None | None | None |
34 | 54.0 | M | Black | 108.4 | 182.9 | 32.48 | 113 | 5.8 | No | 200 | 276 | 105 | 32.25 | Hypertension, hyperlipidemia, gout | Losartan, allopurinol, omeprazole, trazadone, niacin, carvedilol | None | None |
35 | 60.0 | F | Black | 90.3 | 172.7 | 30.32 | 90 | 5.7 | No | 189 | 89 | 106 | 40.00 | Goiter, osteoarthritis, migraine headaches, chronic back pain | Cholecalciferol, psyllium, naproxen | None | Constipation |
36 | 70.0 | M | Black | 99.8 | 172.7 | 33.52 | 272 | 7.7 | Yes | 223 | 73 | 165 | 5.00 | HTN, hyperlipidemia, GERD, schizophrenia, BPH | Insulin, potassium, tamsulosin, finasteride, atorvastatin, carvedilol, metformin | None | None |
37 | 59.0 | M | Black | 92.1 | 177.8 | 29.19 | 99 | ND | No | 171 | 93 | 112 | 31.67 | HTN, spinal stenosis, hyperlipidemia | Methocarbamol, naproxen, hydrochlorothiazide, gabapentin, loratidine | None | None |
38 | 32.0 | M | Black | 81.6 | 180.3 | 25.16 | 94 | 5.3 | No | 187 | 286 | 94 | 34.33 | Posttraumatic stress disorder, depression | Omeprazole, bupropion, ferrous sulfate, folic acid, hydroxyzine, melatonin, prazosin | None | None |
39 | 59.0 | M | White | 83.9 | 172.7 | 28.19 | 77 | 5.8 | No | 157 | 116 | 95 | 50.00 | Posttraumatic stress disorder, depression, chronic hepatitis C, GERD | Hydrocodone, gabapentin, tamsulosin, ibuprofen, prazosin, ledipasvir/sofobuvir, paroxetine, psyllium, creon, methocarbamol, verapamil | None | Diarrhea |
40 | 49.0 | M | Black | 91.2 | 175.3 | 29.74 | 96 | 5.4 | No | 257 | 179 | 175 | 32.67 | BPH, migraines, HTN, asthma, hyperlipidemia, GERD | Mirtazapine, quetiapine, atorvastatin, tamsulosin, topiramate, cyanocobalamin | None | None |
41 | 55.0 | M | Black | 99.8 | 167.6 | 35.58 | 95 | 5.9 | No | 224 | 68 | 158 | 35.50 | HTN, hyperlipidemia, sleep apnea, depression | Losartan, amlodipine, atorvastatin | None | None |
42 | 60.0 | M | White | 97.1 | 185.4 | 28.39 | 133 | 6.8 | Yes | 256 | 976 | 71 | 7.67 | DM, HTN, GERD, posttraumatic stress disorder, depression | Allopurinol, trazadone, citalopram, amlodipine, atenolol, indomethacin, lisinopril, lovastatin, omeprazole, sildenafil | None | Diarrhea |
Localization of Bacteria and Quantitation of Bacterial-Epithelial Distance by Fluorescent In Situ Hybridization/Confocal Microscopy
Immunofluorescence Staining of CD19 and CD68 Cells and Quantitation by Confocal Microscopy
Generation of Experimental Mice
Streptozotocin-Induced Diabetes
Fasting Blood Glucose Measurement
Fecal Glucose Measurement
Statistical Analysis
Results








Discussion
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Footnotes
Author contributions Benoit Chassaing and Andrew T. Gewirtz conceived the project, designed the experiments, interpreted the results, and wrote the manuscript. Shanthi Srinivasan and Shreya M. Raja collected biopsies and critically revised the manuscript. Benoit Chassaing performed experiments and analysis. James D. Lewis performed statistical analysis and helped interpret data.
Conflicts of interest The authors disclose no conflicts.
Funding This work was supported by National Institutes of Health grants DK099071 and DK083890 (A.T.G.), National Institutes of Health grant DK080684 (S.S.), and VA-MERIT (S.S.). B.C. is a recipient of the Career Development Award from the Crohn’s and Colitis Foundation of America.
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