Keywords
Abbreviations used in this paper:
ALD (alcoholic liver disease), AMP (antimicrobial peptides and proteins), Fiaf (fasting-induced adipocyte factor), HFD (high-fat diet), IBD (inflammatory bowel disease), IL (interleukin), LCFA (long-chain fatty acid), LPS (lipopolysaccharide), NAFLD (nonalcoholic fatty liver disease), NASH (nonalcoholic steatohepatitis), NLRP (nucleotide-binding domain and leucine rich repeat-containing protein), NOD2 (nucleotide-binding oligomerization domain 2), PAMPs (pathogen-associated molecular patterns), Reg3 (regenerating islet-derived 3), TLR (Toll-like receptor), TNF (tumor necrosis factor), TNFR (tumor necrosis factor receptor)Factors Contributing to Intestinal Dysbiosis
Environmental Factors That Shape the Microbiota in Liver Disease
Genetic Factors Leading to Intestinal Dysbiosis
Mucosal Immune System
Intestinal Dysbiosis Associated With Liver Disease
Leaky Gut Hypothesis—Truth or Myth?
Additional Intestinal Factors Contributing to Liver Disease

Conclusion and Future Directions
References
- A human gut microbial gene catalogue established by metagenomic sequencing.Nature. 2010; 464: 59-65
- Glycan foraging in vivo by an intestine-adapted bacterial symbiont.Science. 2005; 307: 1955-1959
- Human gut microbiome viewed across age and geography.Nature. 2012; 486: 222-227
- Microbial exposure during early life has persistent effects on natural killer T cell function.Science. 2012; 336: 489-493
- Regulation of humoral and cellular gut immunity by lamina propria dendritic cells expressing Toll-like receptor 5.Nat Immunol. 2008; 9: 769-776
- Microbial ecology: human gut microbes associated with obesity.Nature. 2006; 444: 1022-1023
- Human nutrition, the gut microbiome and the immune system.Nature. 2011; 474: 327-336
- Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.Proc Natl Acad Sci USA. 2007; 104: 13780-13785
- Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders.Cell. 2013; 155: 1451-1463
- Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome.Nature. 2013; 499: 97-101
- Transplanting a fibrogenic microbiota.Hepatology. 2014; 59: 1660-1661
- Deficiency of intestinal mucin-2 ameliorates experimental alcoholic liver disease in mice.Hepatology. 2013; 58: 108-119
- Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth.Nature. 2012; 491: 254-258
- Enteric dysbiosis associated with a mouse model of alcoholic liver disease.Hepatology. 2011; 53: 96-105
- Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH.Hepatology. 2013; 57: 601-609
- Dysbiosis-induced intestinal inflammation activates tumor necrosis factor receptor I and mediates alcoholic liver disease in mice.Hepatology. 2015; 61: 883-894
- A core gut microbiome in obese and lean twins.Nature. 2009; 457: 480-484
- Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans.Am J Clin Nutr. 2011; 94: 58-65
- The gut microbiota as an environmental factor that regulates fat storage.Proc Natl Acad Sci USA. 2004; 101: 15718-15723
- Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity.Proc Natl Acad Sci USA. 2014; 111: E4485-E4493
- Jejunal microflora in patients with chronic alcohol abuse.Hepatogastroenterology. 1984; 31: 30-34
- Colonic microbiome is altered in alcoholism.Am J Physiol Gastrointest Liver Physiol. 2012; 302: G966-G978
- Intestinal dysbiosis: a possible mechanism of alcohol-induced endotoxemia and alcoholic steatohepatitis in rats.Alcohol Clin Exp Res. 2009; 33: 1836-1846
- Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment.PloS One. 2013; 8: e53028
- Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice.Gastroenterology. 2015; 148: 203-214 e216
- Lactobacillus rhamnosus GG treatment potentiates intestinal hypoxia-inducible factor, promotes intestinal integrity and ameliorates alcohol-induced liver injury.Am J Pathol. 2011; 179: 2866-2875
- Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits.Nature. 2008; 455: 804-807
- Antibiotics in early life alter the murine colonic microbiome and adiposity.Nature. 2012; 488: 621-626
- Early-life exposures associated with antibiotic use and risk of subsequent Crohn’s disease.Scand J Gastroenterol. 2008; 43: 961-966
- Antibiotic use and the development of Crohn’s disease.Gut. 2004; 53: 246-250
- Childhood factors in ulcerative colitis and Crohn’s disease: an international cooperative study.Scand J Gastroenterol. 1987; 22: 1009-1024
- Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns.Proc Natl Acad Sci USA. 2010; 107: 11971-11975
- Disordered microbial communities in the upper respiratory tract of cigarette smokers.PloS One. 2010; 5: e15216
- Smokers with active Crohn’s disease have a clinically relevant dysbiosis of the gastrointestinal microbiota.Inflamm Bowel Dis. 2012; 18: 1092-1100
- Smoking cessation induces profound changes in the composition of the intestinal microbiota in humans.PloS One. 2013; 8: e59260
- Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus.Inflamm Bowel Dis. 2010; 16: 1841-1849
- Comparison of the gut microbiotas of healthy adult twins living in South Korea and the United States.Appl Environ Microbiol. 2011; 77: 7433-7437
- Molecular analysis of the gut microbiota of identical twins with Crohn’s disease.ISME J. 2008; 2: 716-727
- Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors.Proc Natl Acad Sci USA. 2010; 107: 18933-18938
- Human genetics shape the gut microbiome.Cell. 2014; 159: 789-799
- Complex host genetics influence the microbiome in inflammatory bowel disease.Genome Med. 2014; 6: 107
- NOD2 gene variants are a risk factor for culture-positive spontaneous bacterial peritonitis and monomicrobial bacterascites in cirrhosis.Liver Int. 2012; 32: 223-230
- Nucleotide-binding oligomerization domain containing 2 (NOD2) variants are genetic risk factors for death and spontaneous bacterial peritonitis in liver cirrhosis.Hepatology. 2010; 51: 1327-1333
- A non-interventional study of the genetic polymorphisms of NOD2 associated with increased mortality in non-alcoholic liver transplant patients.BMC Gastroenterol. 2014; 14: 4
- NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis.Cell. 2011; 145: 745-757
- Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity.Nature. 2012; 482: 179-185
- Altered intestinal microbiota and blood T cell phenotype are shared by patients with Crohn’s disease and their unaffected siblings.Gut. 2014; 63: 1578-1586
- Interactions between the microbiota and the immune system.Science. 2012; 336: 1268-1273
- Viscosity gradient within the mucus layer determines the mucosal barrier function and the spatial organization of the intestinal microbiota.Inflamm Bowel Dis. 2007; 13: 963-970
- The gut microbiota—masters of host development and physiology.Nat Rev Microbiol. 2013; 11: 227-238
- Participation of mammalian defensins and cathelicidins in anti-microbial immunity: receptors and activities of human defensins and cathelicidin (LL-37).J Leukoc Biol. 2001; 69: 691-697
- MyD88 Signaling in T cells directs IgA-mediated control of the microbiota to promote health.Cell Host Microbe. 2015; 17: 153-163
- A primitive T cell-independent mechanism of intestinal mucosal IgA responses to commensal bacteria.Science. 2000; 288: 2222-2226
- The inhibitory receptor PD-1 regulates IgA selection and bacterial composition in the gut.Science. 2012; 336: 485-489
- Nod2 is required for the regulation of commensal microbiota in the intestine.Proc Natl Acad Sci USA. 2009; 106: 15813-15818
- Enteric defensins are essential regulators of intestinal microbial ecology.Nat Immunol. 2010; 11: 76-83
- The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine.Science. 2011; 334: 255-258
- Intestinal bacterial translocation in rats with cirrhosis is related to compromised Paneth cell antimicrobial host defense.Hepatology. 2012; 55: 1154-1163
- The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions.Proc Natl Acad Sci USA. 2011; 108: 4659-4665
- Microbial adhesins to gastrointestinal mucus.Trends Microbiol. 2012; 20: 30-39
- Mucin-bacterial interactions in the human oral cavity and digestive tract.Gut Microbes. 2010; 1: 254-268
- The mucin Muc2 limits pathogen burdens and epithelial barrier dysfunction during Salmonella enterica serovar Typhimurium colitis.Infect Immun. 2013; 81: 3672-3683
- IL-22-STAT3 pathway plays a key role in the maintenance of ileal homeostasis in mice lacking secreted mucus barrier.Inflamm Bowel Dis. 2015; 21: 531-542
- Alterations of the human gut microbiome in liver cirrhosis.Nature. 2014; 513: 59-64
- Reduced gastric acid output in cirrhosis: quantitation and relationships.Gut. 1964; 5: 422-428
- Intestinal microbiota was assessed in cirrhotic patients with hepatitis B virus infection. Intestinal microbiota of HBV cirrhotic patients.Microb Ecol. 2011; 61: 693-703
- Interactions between the intestinal microbiome and liver diseases.Gastroenterology. 2014; 146: 1513-1524
- Alcoholic liver disease: the gut microbiome and liver crosstalk.Alcohol Clin Exp Res. 2015; 39: 763-775
- Dysbiosis contributes to fibrogenesis in the course of chronic liver injury in mice.Hepatology. 2014; 59: 1738-1749
- Metabolic endotoxemia initiates obesity and insulin resistance.Diabetes. 2007; 56: 1761-1772
- Intestinal permeability parameters in obese patients are correlated with metabolic syndrome risk factors.Clin Nutr. 2012; 31: 735-740
- Increased intestinal permeability and tight junction alterations in nonalcoholic fatty liver disease.Hepatology. 2009; 49: 1877-1887
- The differing effects of acute and chronic alcohol on gastric and intestinal permeability.Am J Gastroenterol. 1994; 89: 2205-2211
- Diet-induced weight loss reduces colorectal inflammation: implications for colorectal carcinogenesis.Am J Clin Nutr. 2011; 93: 234-242
- High-fat diet: bacteria interactions promote intestinal inflammation which precedes and correlates with obesity and insulin resistance in mouse.PLoS One. 2010; 5: e12191
- Energy intake is associated with endotoxemia in apparently healthy men.Am J Clin Nutr. 2008; 87: 1219-1223
- A high-fat meal induces low-grade endotoxemia: evidence of a novel mechanism of postprandial inflammation.Am J Clin Nutr. 2007; 86: 1286-1292
- Endotoxin and plasminogen activator inhibitor-1 serum levels associated with nonalcoholic steatohepatitis in children.J Pediatr Gastroenterol Nutr. 2010; 50: 645-649
- Susceptibility to gut leakiness: a possible mechanism for endotoxaemia in non-alcoholic steatohepatitis.Liver Int. 2008; 28: 1026-1033
- Bacterial translocation to mesenteric lymph nodes is increased in cirrhotic rats with ascites.Gastroenterology. 1995; 108: 1835-1841
- Increased prevalence of intestinal inflammation in patients with liver cirrhosis.World J Gastroenterol. 1999; 5: 391-396
- Activated intestinal macrophages in patients with cirrhosis release NO and IL-6 that may disrupt intestinal barrier function.J Hepatol. 2013; 58: 1125-1132
- Reply to: “Bacterial translocation in liver cirrhosis: site and role in fibrogenesis”.J Hepatol. 2014; 61: 710-711
- Pathological bacterial translocation in liver cirrhosis.J Hepatol. 2014; 60: 197-209
- Toll-like receptor 4 is involved in the mechanism of early alcohol-induced liver injury in mice.Hepatology. 2001; 34: 101-108
- The critical role of toll-like receptor (TLR) 4 in alcoholic liver disease is independent of the common TLR adapter MyD88.Hepatology. 2008; 48: 1224-1231
- TLR4 enhances TGF-beta signaling and hepatic fibrosis.Nat Med. 2007; 13: 1324-1332
- Toll-like receptor 2-mediated intestinal injury and enteric tumor necrosis factor receptor I contribute to liver fibrosis in mice.Gastroenterology. 2012; 143: 1330-1340 e1331
- Hematopoietic cell-specific deletion of toll-like receptor 4 ameliorates hepatic and adipose tissue insulin resistance in high-fat-fed mice.Cell Metab. 2009; 10: 419-429
- Toll-like receptor 9 promotes steatohepatitis by induction of interleukin-1 beta in mice.Gastroenterology. 2010; 139: 323-334 e327
- Toll-like receptor-4 signaling and Kupffer cells play pivotal roles in the pathogenesis of non-alcoholic steatohepatitis.J Hepatol. 2007; 47: 571-579
- Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice.Diabetes. 2008; 57: 1470-1481
- Antibiotics prevent liver injury in rats following long-term exposure to ethanol.Gastroenterology. 1995; 108: 218-224
- Reduction of endotoxin attenuates liver fibrosis through suppression of hepatic stellate cell activation and remission of intestinal permeability in a rat non-alcoholic steatohepatitis model.Mol Med Rep. 2015; 11: 1693-1700
- Effect of treatment with paromomycin on endotoxemia in patients with alcoholic liver disease—a double-blind, placebo-controlled trial.Alcohol Clin Exp Res. 1997; 21: 1367-1373
- Rifaximin treatment in hepatic encephalopathy.N Engl J Med. 2010; 362: 1071-1081
- Commensal microbiota is hepatoprotective and prevents liver fibrosis in mice.FASEB J. 2015; 29: 1043-1055
- Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites.Proc Natl Acad Sci USA. 2009; 106: 3698-3703
- Symbiotic bacterial metabolites regulate gastrointestinal barrier function via the xenobiotic sensor PXR and Toll-like receptor 4.Immunity. 2014; 41: 296-310
- The role of the gut microbiota in nonalcoholic fatty liver disease.Nat Rev Gastroenterol Hepatol. 2010; 7: 691-701
- High-fat diet determines the composition of the murine gut microbiome independently of obesity.Gastroenterology. 2009; 137 (e1–2): 1716-1724
- Obesity and the gut microbiota: does up-regulating colonic fermentation protect against obesity and metabolic disease?.Genes Nutr. 2011; 6: 241-260
- Mechanisms underlying the resistance to diet-induced obesity in germ-free mice.Proc Natl Acad Sci USA. 2007; 104: 979-984
- Gut microbiota from twins discordant for obesity modulate metabolism in mice.Science. 2013; 341: 1241214
- An obesity-associated gut microbiome with increased capacity for energy harvest.Nature. 2006; 444: 1027-1031
- Obesity and female gender increase breath ethanol concentration: potential implications for the pathogenesis of nonalcoholic steatohepatitis.Am J Gastroenterol. 2001; 96: 1200-1204
- Increased gastrointestinal ethanol production in obese mice: implications for fatty liver disease pathogenesis.Gastroenterology. 2000; 119: 1340-1347
- The intestinal microbiome and the leaky gut as therapeutic targets in alcoholic liver disease.Front Physiol. 2012; 3: 402
- In vitro acetaldehyde formation by human colonic bacteria.Gut. 1994; 35: 1271-1274
- CYP2E1 potentiates binge alcohol-induced gut leakiness, steatohepatitis, and apoptosis.Free Radic Biol Med. 2013; 65: 1238-1245
- Role for intestinal CYP2E1 in alcohol-induced circadian gene-mediated intestinal hyperpermeability.Am J Physiol Gastrointest Liver Physiol. 2013; 305: G185-G195
- Acetaldehyde-induced barrier disruption and paracellular permeability in Caco-2 cell monolayer.Methods Mol Biol. 2008; 447: 171-183
- Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice.Proc Natl Acad Sci USA. 2006; 103: 12511-12516
- Phospholipid transfer protein deficiency impairs apolipoprotein-B secretion from hepatocytes by stimulating a proteolytic pathway through a relative deficiency of vitamin E and an increase in intracellular oxidants.J Biol Chem. 2005; 280: 18336-18340
- The prevention by choline of liver cirrhosis in rats on high fat, low protein diets.Science. 1941; 93: 598-599
- Association between composition of the human gastrointestinal microbiome and development of fatty liver with choline deficiency.Gastroenterology. 2011; 140: 976-986
- Nod2 is essential for temporal development of intestinal microbial communities.Gut. 2011; 60: 1354-1362
Article info
Publication history
Footnotes
Conflicts of interest The authors disclose no conflicts.
Funding This study was funded by in part by National Institutes of Health grants K08 DK081830, R01 AA020703, and U01 AA021856, and award number I01BX002213 from the Biomedical Laboratory Research and Development Service of the VA Office of Research and Development (to B.S.).
Identification
Copyright
User license
Creative Commons Attribution – NonCommercial – NoDerivs (CC BY-NC-ND 4.0) |
Permitted
For non-commercial purposes:
- Read, print & download
- Redistribute or republish the final article
- Text & data mine
- Translate the article (private use only, not for distribution)
- Reuse portions or extracts from the article in other works
Not Permitted
- Sell or re-use for commercial purposes
- Distribute translations or adaptations of the article
Elsevier's open access license policy